Zaulda, Fides Angeli; Yang, Seung Hyun; Han, Junping; Mlotshwa, Sizolwenkosi; Dorrance, Anne; Qu, Feng. 2022. A cowpea severe mosaic virus-based vector simplifies virus-induced gene silencing and foreign protein expression in soybean. Plant Methods Volume 18, Issue 1
Perdoncini Carvalho C, Ren R, Han J, Qu F. 2022. Natural selection, intracellular bottlenecks of virus populations, and viral superinfection. Annu Rev Virology Vol. 9:121-137
Tatineni S, Alexander J, Qu F. 2022. Differential synergistic interactions among four different wheat-infecting viruses. Front Microbiol Front. Microbiol. 12:800318. doi: 10.3389/fmicb.2021.800318.
Zhang S, Sun R, Perdoncini Carvalho C, Han J, Zheng L, Qu F. 2021. Replication-dependent biogenesis of turnip crinkle virus long noncoding RNAs. J Virol. doi:10.1128/JVI.00169-21.
Zhang S, Sun R, Guo Q, Zhang X-F and Qu F. (2019) Repression of turnip crinkle virus replication by its replication protein p88. Virology 526:165-172.
Zhang, X.-F., Zhang, S., Guo, Q., Sun, R., Wei, T., and Qu, F. (2018). A new mechanistic model for viral cross protection and superinfection exclusion. Front. Plant Sci. 9, 40. doi: 10.3389/fpls.2018.00040.
Guo, J., Han, S., Wang, Y., Zhao, J., Xin, C., Zheng, X., Liu, Y., Wang, Y., and Qu, F. (2018). Essential role of NbNOG1 in ribosomal RNA processing. J. Integ. Plant Biol. 60, 1018-1022. https://doi.org/10.1111/jipb.12691.
Gedling, C.R., Ali, E.M., Gunadi, A., Finer, J.J., Xie, K., Liu, Y., Yoshikawa, N., Qu, F., and Dorrance, A.E. (2018). Highly efficient apple latent spherical virus-induced gene silencing in multiple soybean genotypes through direct inoculation of agro-infiltrated Nicotiana benthamiana extract. Plant Meth. 14, 19. https://doi.org/10.1186/s13007-018-0286-7.
Yao, X.-L., Han, J., Domier, L.L., Qu, F., and Lewis Ivey, M.L. (2018). First report of grapevine red blotch virus in an Ohio vineyard. Plant Dis. 102, 463. https://doi.org/10.1094/PDIS-08-17-1141-PDN.
Zhang, X.-F., Sun, R., Guo, Q., Zhang, S., Meulia, T., Halfmann, R., Li, D., Qu, F. (2017). A self-perpetuating repressive state of a viral replication protein blocks superinfection by the same virus. PLoS Pathogens 13(3): e1006253. https://doi.org/10.1371/journal.ppat.1006253.
Guo, JB; Han, JP; Lin, JY; Finer, J; Dorrance, A; Qu, F. (2017). Functionally interchangeable cis-acting RNA elements in both genome segments of a picorna-like plant virus. Scientific Reports Vol 7 Article 1017.
Stewart, L.R., Jarugula, S., Zhao, Y., Qu, F., Marty, D.M. (2017). Identification of a maize chlorotic dwarf virus silencing suppressor protein. Virology 504, 88-95.
Yao, X., Han, J., Domier, L., Qu, F., and Lewis Ivey, M.L. (2017). First report of Grapevine red blotch virus in Ohio vineyards. Plant Disease https://doi.org/10.1094/PDIS-08-17-1141-PDN
Yao, X., Han, J., Domier, L., Qu, F., and Lewis Ivey, M.L. (2017). First report of tomato ringspot virus in an Ohio vineyard. Plant Disease https://doi.org/10.1094/PDIS-08-17-1153-PDN
Zhang, X.-F., Zhang, X.C., Wu, K., Liu, Z., Li, D., and Qu, F. (2016). Incomplete DRB4-dependence of the DRB4-mediated antiviral defense. Sci. Rep. 6, 39244. DOI: 10.1038/srep39244.
Han, J., Domier, L.L., Cassone, B, J., Dorrance, A., and Qu, F. (2016). Assessment of common soybean-infecting viruses in Ohio, USA, through multisite sampling and high-throughput sequencing. Plant Health Prog. 17, 133-140.
Jarugula, S., Charlesworth, S., Qu, F., and Stewart, L.R. (2016). Soil-borne wheat mosaic virus infectious clone and manipulation for gene-carrying capacity. Arch. Virol. DOI 10.1007/s00705-016-2863-2.
Qu, F. (2016). Plant viruses as gene expression and silencing vectors. A chapter in: Encyclopedia of Life Sciences (eLS). John Wiley & Sons, Ltd: Chichester. DOI: 10.1002/9780470015902.a0020709.pub2.
Zhang, X.-F., and Qu, F. (2016). Cross protection of plant viruses: recent developments and mechanistic implications. Chapter 10 in: Wang (ed), Current Research Topics in Plant Virology, p241-250. Springer, Switzerland.
Li, Y., and Qu, F. (2016). Plant genome surveillance by small RNAs and long noncoding RNAs. Reviews in Cell Biology and Molecular Medicine. 2, 208–231. DOI: 10.1002/3527600906.mcb.201600013.
Zhang, X.-F., Guo, J., Zhang, X., Meulia, T., Paul, P., Madden, L.V., Li, D., and Qu, F. (2015). Random plant viral variants attain temporal advantages during systemic infections and in turn resist other variants of the same virus. Sci. Rep. 5, 15346.
Kang, S.-H., Qu, F., and Morris, T.J. (2015). A nuclear fraction of turnip crinkle virus capsid protein is important for elicitation of the host resistance response. Virus Res. 210, 264-270.
Esseili, M.A., Chin, A., Saif, L., Miller, S.A., Qu, F., Ivey, M.L.L., and Wang, Q. (2015). Postharvest survival of Porcine Sapovirus, a human Norovirus surrogate, on phytopathogen-infected leafy greens. J. Food Protect. 78, 1472-1480.
Kang, S.-H., Qu, F., and Morris, T.J. (2015). A spectrum of HRT-dependent hypersensitive responses elicited by the 52 amino acid N-terminus of turnip crinkle virus capsid protein and its mutants. Virus Res. 200, 30-34.
Chewachong, G.M., Miller, S.A., Blakeslee, J.J., Francis, D.M., Morris, T.J., and Qu, F. (2015). Generation of an attenuated, cross-protective Pepino mosaic virus variant through alignment-guided mutagenesis of the viral capsid protein. Phytopathology 105, 126-134.
Zhang, X.-F., and Qu, F. (2015). Multi-component plant viruses. In: eLS. John Wiley & Sons, Ltd: Chichester. DOI: 10.1002/9780470015902.a0024783.
Zhang, X., and Qu, F. (2014). Plant virus silencing suppressors and RNA silencing in plants. In: Encyclopedia of Life Sciences (eLS). John Wiley & Sons, Ltd: Chichester. DOI: 10.1002/9780470015902.a0020710.pub2.
Singh, Jasleen; Zhang, Xiuchun; Stewart, Lucy; Mitchell, Thomas K. and Qu, Feng. 2014. Role of double-stranded RNA-binding proteins in RNA silencing and antiviral defense. Plant Virus-Host Interaction: Molecular Approaches and Viral Evolution, pp 1-16. Edited by: Gaur, RK; Hohn, T. and Sharma, P.
Lin, J, Guo, J, Finer, J, Dorrance, A, Redinbaugh, P, and Qu, F. The bean pod mottle virus RNA2-encoded 58K protein is required in cis for RNA2 accumulation. Journal of Virology. 88, 3213-3222.
Han, J, Ellis, MA, and Qu, F. 2014. First report of Grapevine leaf roll-associated virus-2 and -3 in Ohio vineyards. Plant Disease 98, 284.
Ali, A.K., Lin, J, Han, J, Ibrahim, KM, Jarjees, MM, Qu, F, 2014. The 5' untranslated region of Bean pod mottle virus RNA2 tolerates unusually large deletions or insertions. Virus Research 179, 247-250.
Donze, T, Qu, F, Twigg, P, and Morri, T.J. 2014. Turnip crinkle virus coat protein inhibits the basal immune response to virus invasion in Arabidopsis by binding to the NAC transcription factor TIP. Virology 449, 207-214
Jiang, L, Wijeratne, A.J., Wijeratne, S, Fraga, M, Meulia, T, Doohan, D, Li, Z, and Qu, F. 2013. Profiling mRNAs of two Cuscuta species reveals possible candidate transcripts shared by parasitic plants. PLoS One 8, e81389.
Stewart, Lucy; Paul, Pierce; Qu, Feng; Redinbaugh, Margaret G.; Miao, Hongqin; Todd, Jane; and Jones, Mark. Wheat mosaic virus (WMoV), the causal agent of High Plains disease, is present in Ohio wheat fields. Plant Disease 97:1125.
Jiang, Linjian; Qu, Feng; Li, Zhaohu, and Doohan, Doug. 2013. Inter-species protein trafficking endows dodder (Cuscuta pentagona) with a host-specific stress-tolerant trait. New Phytologist 198: 1017-1022.
Lin, Junyan; Ali, Ahmed Khamis; Chen, Ping; Ghabrial, Said; Finer, John; Dorrance, Anne; Redinbaugh, Margaret and Qu, Feng. 2013. A stem-loop structure in the 5’ untranslated region of Bean pod mottle virus RNA2 is specifically required for RNA2 accumulation. Journal of General Virology 94: 1415-1420.
Zhang, X, Zhao, X, Zhang, Y, Niu, S, Yu, J, Han, C, Qu, F, and Li, D. (2013). Basic amino acid residues at the N terminus of Beet black scorch virus capsid protein are critical for virion stability and systemic movement. Virology Journal 10: 200.
Han, Janping; Domier, Leslie L.; Dorrance, Anne and Qu, Feng. 2013. First report of Soybean vein necrosis-associated virus in Ohio soybean fields. Plant Disease 97: 693.
Zhang, Xiuchun; Zhang, Xiaofeng; Singh, Jasleen; Li, Dawei; and Qu, Feng. 2012. Temperature-dependent survival of Turnip crinkle virus-infected Arabidopsis plants relies on an RNA silencing-based defense that requires DCL2, AGO2, and HEN1". Journal of Virology. 86: 6847-6854.
Tatineni, Satyanarayana; Qu, Feng; Li, Ruhui; Morris, T. Jack and French Roy .2012. Triticum mosaic poacevirus enlists P1 rather than HC-Pro to suppress RNA silencing-mediated host defense. Virology 433: 104-115.
Han, Junping; Domier, Leslie; Dorrance, Anne; Qu, Feng. 2012. Complete genome sequence of a novel pararetrovirus isolated from soybean. Journal of Virology 86: 9555
De La Torre, Carola; Feng Qu; Margaret G. Redinbaugh and Dennis Lewandowski. 2012. Biological and molecular characterization of a US isolate of Hosta virus X. Phytopathology 102, 1176-1181.
Young, BA, Stenger, DC, Qu, F, Morris, TJ, Tatineni, S, and French, R. 2012. Tritimovirus P1 functions as a suppressor of. RNA silencing and an enhancer of disease symptoms. Virus Research 163: 672-677.
Zhang, X., Sato, S., Ye, X., Dorrance, A.E., Morris, T.J., Clemente, T. E. and Qu, F. 2011. Robust RNAi-based resistance to mixed infection of three viruses in soybean plants expressing separate short hairpins from a single transgene. Phytopathology 101:1264-1269.
Feng Qu. 2010. Antiviral role of plant-encoded RNA-dependent RNA polymerases revisited with deep 1 sequencing of small interfering RNAs of virus origin. Mol. Plant-Microbe Interact. 23, 1248-1252.
Mingxia Cao, Xiaohong Ye, Kristen Willie, Junyan Lin, Xiuchun Zhang, Margaret G. Redinbaugh, Anne E. Simon, T. Jack Morris, and Feng Qu. 2010. The capsid protein of Turnip crinkle virus overcomes two separate defense barriers to facilitate viral systemic movement in Arabidopsis. Journal of Virology. 84, 7793-7802.
Feng Qu 2010. Plant viruses versus RNAi: Simple pathogens reveal complex insights on plant anti-microbial defense. Wiley Interdisciplinary Reviews: RNA (WIREs RNA). 1, 22-33
Feng Qu, Xiaohong Ye, and T. Jack Morris. 2008. Arabidopsis DRB4, AGO1, and AGO7 participate in a DCL4-initiated antiviral RNA silencing pathway that is negatively regulated by DCL1. Proceedings of the National Academy of Sciences, Sept. 23, 2008 (Vol 105, no. 38: 14732-14737).
Powers, Jason G.; Sit, Tim L.; Qu, Feng; Morris, T. Jack; Kim, Kook-Hyung; Lommel, Steven A. 2008. A versatile assay for the identification of Rna silencing suppressors based on complementation of viral movement. Molecular Plant-Microbe Interactions. Vol. 21, no. 7: 879-890.
Feng Qu and T. Jack Morris (2007). Plant Virus Silencing Suppressors and RNA Silencing in Plants. In: ENCYCLOPEDIA OF LIFE SCIENCES. John Wiley & Sons, Ltd: Chichester http://www.els.net/ [10.1002/9780470015902.a0020710].
Drake C. Stenger, Brock A. Young, Feng Qu, T. Jack Morris, and Roy French (2007). Wheat streak mosaic virus lacking HC-Pro is competent to produce disease synergism in mixed infections with Maize chlorotic mottle virus. Phytopathology 97, 1213-1221.
Feng Qu, and T. Jack Morris (2007). Carmoviruses. A chapter in the book "Encyclopedia of Virology" 3rd edition. Academic Press.
Feng Qu, Xiaohong Ye, Hou, G., Shirley Sato, Thomas E. Clemente and T. Jack Morris (2005). The Nicotiana benthamiana homolog of SDE1/SGS2/RDR6 functions in a temperature-dependent manner to defend both differentiated tissues and shoot apices against viral invasion. Journal of Virology 79, 15209-15217.
Feng Qu, and T. Jack Morris (2005). Suppressors of RNA silencing encoded by plant viruses and their role in viral infections. FEBS Letters 579, 5958-5964.
Tao Ren, Feng Qu and T. Jack Morris (2005). The nuclear localization of the Arabidopsis transcription factor TIP is blocked by its interaction with the coat protein of Turnip Crinkle Virus. Virology 331, 316-324.
Chang Won Choi, Feng Qu, Tao Ren, Xiaohong Ye and T. Jack Morris (2004). The RNA silencing suppressor function of Turnip crinkle virus coat protein cannot be attributed to its interaction with the Arabidopsis protein TIP. Journal of General Virology 85, 3415-3420.
Feng Qu, Tao Ren, and T. Jack Morris (2003). The coat protein of Turnip crinkle virus suppresses post-transcriptional gene silencing at an early initiation step. Journal of Virology 77, 511-522.
Feng Qu, and T. Jack Morris (2002). Efficient infection of Nicotiana benthamiana by Tomato bushy stunt virus is facilitated by the coat protein and maintained by p19 through suppression of gene silencing. Molecular Plant-Microbe Interactions 15, 193-202.
T. Jack Morris, Tao Ren, and Feng Qu (2001). Viral-Host Interactions exemplified by plant viruses of Tombusviridae: The role of viral coat proteins and a silencing suppressor in disease development. Proceedings of the 11th Congress of the Mediterranean Phytopathological Union. P 84-87. University of Evora, Portugal.
Feng Qu, and T. Jack Morris (2000). Cap-independent translational enhancement of Turnip crinkle virus genomic and subgenomic RNAs. Journal of Virology 74, 1085-1093.
* Tao Ren, Feng Qu (co-first author) and T. Jack Morris (2000). HRT gene function requires interaction between a NAC protein and viral capsid protein to confer resistance to Turnip crinkle virus. The Plant Cell 12, 1917-1925.
Yuval Cohen, Feng Qu, Andreas Gisel, T. Jack Morris, and Patricia C. Zambryski (2000). Nuclear localization of Turnip crinkle virus movement protein p8. Virology 273, 276-285.
Feng Qu, and T. Jack Morris (1999). Carmoviruses. A chapter in the book "Encyclopedia of Virology" 2nd edition. Academic Press.
Wen zhe Li, Feng Qu, and T. Jack Morris (1998). Cell to cell movement of turnip crinkle virus is controlled by two small open reading frames that function in trans. Virology 244, 405-416.
Feng Qu, and T. Jack Morris (1997) Encapsidation of turnip crinkle virus is defined by a specific packaging signal and RNA size. Journal of Virology 71, 1428 1435.
Feng Qu, Wenxue Zhai, Hao Chen, Li-Huang Zhu, and T. Jack Morris (1996). Cloning, characterization and transient expression of the gene encoding a rice U3 small nuclear RNA. Gene 172, 217 220.
Reinhard Gruner, Andreas Fels, Feng Qu, Rolf Zimmat, Gerhard Steger, and Detlev Riesner (1995). Interdependence of pathology and replicability with potato spindle tuber viroid. Virology 209,60 69.
Feng Qu, Cornelia Heinrich, Peter Loss, Gerhard Steger, Po Tien, and Detlev Riesner (1993). Multiple pathways of reversion in viroids for conservation of structural elements. The EMBO Journal 12, 2129 2139.
Heng Zhu, Feng Qu and Li Huang Zhu (1993). Isolation of genomic DNAs from plants, fungi and bacteria using benzyl chloride. Nucleic Acids Research 21, 5279 5280.
Detlev Riesner, Tilman Baumstark, Feng Qu, Thorsten Klahn, Peter Loss, Volker Rosenbaum, Michael Schmitz, and Gerhard Steger (1992). Physical basis and biological examples of metastable RNA structures. In "Structural Tools for The Analysis of Protein Nucleic Acids Complexes" (eds. Lilley, D.M.J., Heumann, H. and Suck, D.) Birkhaeuser Verlag AG, Basel p401 435.
Feng Qu, Tien Po and Detlev Riesner (1993) A stable structure of viroids in vitro also exists in infected plants (in Chinese). Acta Biochimica et Biophysica Sinica 25, 571 576.
Feng Qu and Tien Po (1993) Recent advances in viroid research (in Chinese). Chinese Journal of Virology 9, 287 299.
Feng Qu, Yan Shide and Liu Hanming (1988) Preparation of antisera against the common invasive plasmid encoded proteins of Shigella spp. and entero invasive E.Coli ( EIEC) (in Chinese). Chinese Journal of Epidemiology 9, 87 91.
Feng Qu, Yan Shide and Liu Hanming (1988) Establishment of plasmid coded contact hemolytic activity test for detection of invasivety of Shigella spp. (in Chinese). Chinese Journal of Epidemiology 9, 97 99.